This page is under construction!
Software developed by the group and coworkers.
List of available free software and parameters files developed in our group.
All the programs are free for academic use and under GPL.
To download the software/parameters first fill the Registration Form to get the password and then click in the link below.
| Parameter files |
| File |
Description |
| cgDNA3.0.lib |
Library file in AMBER format for DNA Coarse Grained residues
|
| cgDNA3.0.frcmod |
Parameter file in FRCMOD format of AMBER for DNA Coarse Grained residues |
| Software |
| File |
Description |
CGbackmap
|
Fortran routine to backmap DNA coarse grain coordinates to all atom residues |
| cgconv.pl |
Perl script to convert an all atom structure into a coarse grained one given a mapping file |
| Tutorials |
| File |
Description |
cgDNA_MD.pdf
|
Brief description of running a DNA coase-grained molecular dynamics. The text includes generation of the model (from all atom to coarse grain), molecular dynamic perfomane and backmapping of coarse-grained trajectories to all atom coordinates. |
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